In Bosnia the bus seems to be the best way to go. There is train service, but it is infrequent and apparently somewhat inconvenient. I wanted to take the train when I was there, but they all either had horrible departure times or took way too long to get where I wanted to go. They also dont run to that many places to begin with. I recently passed through Mostar by bus. I took an overnight bus from Zagreb to Sarajevo, and then later took another bus to Dubrovnik that passed through Mostar. The winding roads do make the buses a bit slow, however, and they make frequent stops for bathroom trips and smoke breaks.
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